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Appendix C Endophytic fungi from cabbage in New Zealand 2015

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posted on 2019-08-21, 03:25 authored by Michal Kuchar
<br>Table of fungal isolates recovered from cabbage (Brassica oleracea var capitata) in Canterbury region, New Zealand on February 2015.<br><br>practice - agricultural practice in sampled fields - 1 organic , 2 conventional <br>place - arbitrary numbering of fields for given practice <br>plant - arbitrary numbering of plants in given practice <br>part - cabbage tissue R- root, S -stem, L - leaf<br>isolate - code for isolate<br>morfotype - <br>dish - <br>sequence - ITS sequence <br>MatchUNITE - match with UNITE database<br>identityUNITE - BLAST identity result for the best match with UNITE database<br>lengthUNITE - BLAST length result for the best match with UNITE database<br>lineageUNITE - taxonomy extracted from the best match with UNITE database<br>speciesUNITE - species extracted from the best match with UNITE database<br>genusUNITE- genus extracted from the best match with UNITE database<br>identityNCBI - BLAST identity result for the best match with NCBI database<br>MatchNCBI - BLAST identity result for the best match with NCBI database<br>speciesNCBI - species extracted from the best match with NCBI database<br>genusNCBI - genus extracted from the best match with NCBI database<br>lengthNCBI - BLAST length result for the best match with NCBI database<br>species - species name <br>genus - genus name <br>identity - BLAST identity result for the best match<br>blastlength - BLAST length result for the best match<br>seqlength - length of sequence<br>family - family name<br>order - order name<br>class - class name<br>phylum - phylum name<br>fragment - code for tissue fragment from which given isolate originated<br>part2 - cabbage tissue R- root, S -stem, L - leaf<br>medium - cultivation medium - Potato dextrose agar (PDA), Sabouraud dextrose agar (SDA; Difco, BD, USA) and Aspergillus minimal medium<br>(AMM)<br>bengal - whether bengal rose was used for cultivation medium<br><br>

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